Title of article
Linear prediction of force time series to accelerate molecular dynamics simulations Original Research Article
Author/Authors
Branislav Brutovsky، نويسنده , , Gerald R. Kneller، نويسنده ,
Issue Information
دوهفته نامه با شماره پیاپی سال 2005
Pages
4
From page
339
To page
342
Abstract
We have recently proposed a molecular dynamics simulation scheme in which the time-consuming evaluation of non-bonding forces is periodically replaced by linear prediction of the latter from previous values [B. Brutovsky, T. Mülders, G.R. Kneller, J. Chem. Phys. 118 (2003) 6179]. For a simple molecular liquid, consisting of linear molecules with an internal vibrational degree of freedom, the method yields a speedup of up to 7 compared to conventional simulations. The hybrid simulation scheme preserves all essential structural and dynamical quantities. We show here that the linear predictor can be considered as an optimal integrator for finite time steps whose coefficients approach those of a discrete Taylor series if the simulation step tends to zero. The short time dynamics and the structure of the liquid are preserved for much longer periods if linear prediction is used instead of Taylor expansion to predict the non-bonding forces.
Keywords
molecular dynamics simulations , Time series , Linear prediction
Journal title
Computer Physics Communications
Serial Year
2005
Journal title
Computer Physics Communications
Record number
1136900
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