The revision of the model of primary energy conversion in purple bacteria

A simulation method is suggested which enables one to check whether a model for excitation energy exchange in an ensemble of dye molecules fits available experimental data. In particular, this method may deal with photosynthetic units (PSUs) in which excitation migration in antenna chlorophylls and their substantial trapping in reaction centers (RCs) take place. Its application to the purple bacteria has proved that the model, which was generally accepted during the last 20–30 years, is in contradiction with recent experimental facts and thus requires modernization. Two physical mechanisms are discussed: femtosecond polarization of mobile hydrogen atoms near the reaction center special pair (“water latch”), and the presence of excitons delocalized over several core-bacteriochlorophylls (BChls). Our considerations give evidence that neither of these mechanisms alone can resolve the conflict, but their cumulative action appears to be sufficient. Unfortunately, these mechanisms were as yet only partially addressed experimentally.