Title of article :
A novel invariant and sequence comparison for DNA
Author/Authors :
Zhang، نويسنده , , Bao-Hua and Wang، نويسنده , , Hai-Shui and Xu، نويسنده , , Lu، نويسنده ,
Issue Information :
دوفصلنامه با شماره پیاپی سال 2007
Abstract :
We consider numerical characterization of DNA primary sequence based on the positions of bases (a, t, c, g) and the pairs of bases X, Y in DNA (X, Y = a, t, c, g). This leads to a representation of DNA by a numerical sequence. Then, we extract a novel invariant (molecular connectivity index) from the derived numerical sequences. The suitable invariant can offer a characterization of DNA primary sequence. Finally, we provide an illustration of its utility by making a comparison between ten DNA sequences belonging to β-globin gene in different species. The evolutionary relationships of ten species we have revealed in this contribution accord with phylogenetic tree properly.
Keywords :
Similarity comparison , DNA primary sequence , Molecular connectivity index
Journal title :
Chemometrics and Intelligent Laboratory Systems
Journal title :
Chemometrics and Intelligent Laboratory Systems