Title of article
Communications overlapping in fast multipole particle dynamics methods
Author/Authors
Kurzak، نويسنده , , Jakub and Pettitt، نويسنده , , B. Montgomery، نويسنده ,
Issue Information
روزنامه با شماره پیاپی سال 2005
Pages
13
From page
731
To page
743
Abstract
In molecular dynamics the fast multipole method (FMM) is an attractive alternative to Ewald summation for calculating electrostatic interactions due to the operation counts. However when applied to small particle systems and taken to many processors it has a high demand for interprocessor communication. In a distributed memory environment this demand severely limits applicability of the FMM to systems with O(10 K atoms). We present an algorithm that allows for fine grained overlap of communication and computation, while not sacrificing synchronization and determinism in the equations of motion. The method avoids contention in the communication subsystem making it feasible to use the FMM for smaller systems on larger numbers of processors. Our algorithm also facilitates application of multiple time stepping techniques within the FMM. We present scaling at a reasonably high level of accuracy compared with optimized Ewald methods.
Journal title
Journal of Computational Physics
Serial Year
2005
Journal title
Journal of Computational Physics
Record number
1478351
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