• Title of article

    On the estimation and correction of discretization error in molecular dynamics averages

  • Author/Authors

    Arizumi، Yasunori نويسنده , , Nana and Bond، نويسنده , , Stephen D.، نويسنده ,

  • Issue Information
    روزنامه با شماره پیاپی سال 2012
  • Pages
    16
  • From page
    1938
  • To page
    1953
  • Abstract
    The computation of statistical averages is one of the most important applications of molecular dynamics simulation, allowing for the estimation of macroscopic physical quantities through averages of observables sampled along microscopic trajectories. In this article, we investigate the impact of discretization error on the accuracy of molecular dynamics averages. Given a Hamiltonian system and a symplectic integrator, new weighting methods are derived to better approximate averages of certain observables, without changing the system or integrator. These new methods are shown to reduce discretization error and enhance the order of accuracy without high-overhead calculations.
  • Keywords
    symplectic integrators , Nosé–Poincaré Hamiltonian , Ensemble averages , Statistical mechanics , Molecular dynamics
  • Journal title
    Applied Numerical Mathematics
  • Serial Year
    2012
  • Journal title
    Applied Numerical Mathematics
  • Record number

    1529693