Title of article :
Molecular dynamics simulations of calcium binding in gramicidin A
Author/Authors :
Ba?tu?، نويسنده , , Turgut and Kuyucak، نويسنده , , Serdar، نويسنده ,
Issue Information :
روزنامه با شماره پیاپی سال 2006
Abstract :
An important issue in molecular dynamics (MD) simulations of biomolecules is whether membrane proteins can be described using nonpolarizable force fields. To shed further light into this question, we study calcium ion binding and blocking of the gramicidin A channel which has not been investigated in MD simulations before. Potential of mean force calculations for calcium and potassium ions using a nonpolarizable force field reveal that calcium binding to the channel is much weaker compared to potassium, and hence calcium block of potassium current cannot be described. Inclusion of polarization interaction in force fields may help to rectify this problem.
Journal title :
Chemical Physics Letters
Journal title :
Chemical Physics Letters