Author/Authors :
Nabati, Mehdi Research and Development Department - NGM Pharmaceutical Company, Tehran, Iran , Pournamdari, Elham Department of Science - Islamic Azad University Islamshahr Branch, Iran , Forghani, Akbar Research and Development Department - NGM Pharmaceutical Company, Tehran, Iran , Bodaghi-Namileh, Vida Department of Toxicology and Pharmacology - Faculty of Pharmacy - Tehran University of Medical Sciences, Iran , Abdollahi, Delaram Research and Development Department - NGM Pharmaceutical Company, Tehran, Iran , Bastan, Bahareh Research and Development Department - NGM Pharmaceutical Company, Tehran, Iran , Sarshar, Saman Department of Science - Faculty of Physicsy - Lorestan University, Khorramabad, Iran , Mozaffari, Ghader Research and Development Department - NGM Pharmaceutical Company, Tehran, Iran
Abstract :
The purpose of the present research work is prediction of electronic and physico-chemical
properties of the novel medicinal compound Ticagrelor (AZD6140) using density functional
theory (DFT) method. Firstly, its molecular structure was optimized at B3LYP/6-
311++G(d,p) basis set of theory at room temperature. The global reactivity indices used to
study the reactivity and stability of the title molecule. These indices showed it is a more stable
molecule and has low reactivity. On the other hand, the molecular electrostatic potential
(MEP) graph indicates the hetero-atoms (N, F, S and O) of the molecule can interact with
residues of the receptor. The molecular docking analysis data indicates the P2Y12 residues
containing Lys 232, Lys 125, Thr 126, Glu 215, Arg 231, Ile 212, Asn 235, Thr 127, Lys 233,
Arg 128, Tyr 123 and Lys 237 are the main amino acids which participate in the ligandreceptor complex formation. Evaluation of intramolecular bonds shows that the steric
interactions play the main role in the ligand-receptor complex formation.
Keywords :
AZD6140 , P2Y12 receptor , Platelet aggregation inhibition , Ticagrelor , Molecular docking , Molecular simulation