Title of article :
An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma
Author/Authors :
Zhu, Rui Department of Mathematics - Shanghai University - Shanghai, China , Guo, Wenna School of Life Sciences - Zhengzhou University - Zhengzhou - Henan, China , Xu, Xin-Jian Department of Mathematics - Shanghai University - Shanghai, China , Zhu, Liucun School of Life Sciences - Shanghai University - Shanghai, China
Abstract :
Growing evidence suggests that the superiority of long noncoding RNAs (lncRNAs) and messenger RNAs (mRNAs) could act as
biomarkers for cancer prognosis. However, the prognostic marker for hepatocellular carcinoma with high accuracy and sensitivity
is still lacking. In this research, a retrospective, cohort-based study of genome-wide RNA-seq data of patients with hepatocellular
carcinoma was carried out, and two protein-coding genes (GTPBP4, TREM-1) and one lncRNA (LINC00426) were sorted out to
construct an integrative signature to predict the prognosis of patients. The results show that both the AUC and the C-index of this
model perform well in TCGA validation dataset, cross-platform GEO validation dataset, and different subsets divided by gender,
stage, and grade. The expression pattern and functional analysis show that all three genes contained in the model are associated
with immune infiltration, cell proliferation, invasion, and metastasis, providing further confirmation of this model. In summary,
the proposed model can effectively distinguish the high- and low-risk groups of hepatocellular carcinoma patients and is
expected to shed light on the treatment of hepatocellular carcinoma and greatly improve the patients’ prognosis.
Keywords :
Immune-Related , Hepatocellular , GEO , TCGA , RNAs
Journal title :
Computational and Mathematical Methods in Medicine