Author/Authors :
Li, Yuanqi Nanjing University of Chinese Medicine - Nanjing - Jiangsu, China , Tan, Yong Affiliated Hospital of Nanjing University of Chinese Medicine - Nanjing - Jiangsu, China
Abstract :
Polycystic ovary syndrome (PCOS) is caused by the hormonal environment in utero, abnormal metabolism, and
genetics, and it is common in women of childbearing age. A large number of studies have reported that lncRNA is important to
the biological process of cancer and can be used as a potential prognostic biomarker. Thus, we studied lncRNAs’ roles in PCOS
in this article. Methods. We obtained mRNAs’, miRNAs’, and lncRNAs’ expression profiles in PCOS specimens and normal
specimens from the National Biotechnology Information Gene Expression Comprehensive Center database. The EdgeR software
package is used to distinguish the differentially expressed lncRNAs, miRNAs, and mRNAs. Functional enrichment analysis was
carried out by the clusterProfiler R Package, and the lncRNA-miRNA-mRNA interaction ceRNA network was built in
Cytoscape plug-in BiNGO and Database for Annotation, Visualization, and Integration Discovery (DAVID), respectively.
Results. We distinguished differentially expressed RNAs, including 1087 lncRNAs, 14 miRNAs, and 566 mRNAs in PCOS.
Among them, 410 lncRNAs, 11 miRNAs, and 185 mRNAs were contained in the ceRNA regulatory network. The outcomes
from Gene Ontology (GO) analysis showed that the differentially expressed mRNAs (DEMs) were mainly enriched in response
to the maternal process involved in female pregnancy, morphogenesis of embryonic epithelium, and the intracellular steroid
hormone receptor signaling pathway. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis data showed
that DEMs were primarily enriched in pathways related to the TGF-β signaling pathway, Type I diabetes mellitus, and
glycolysis/gluconeogenesis. In addition, we chose NONHSAT123397, ENST00000564619, and NONHSAT077997 as key
lncRNAs due to their high bearing on PCOS. Conclusion. ceRNA networks play an important role in PCOS. The research
indicated that specific lncRNAs were related to PCOS development. NONHSAT123397, ENST00000564619, and
NONHSAT077997 could be regarded as potential diagnostic mechanisms and biomarkers for PCOS. This discovery might
provide more effective and more novel insights into the mechanisms of PCOS worthy of further exploration.
Keywords :
ceRNA , Bioinformatics , Polycystic , PCOS , DAVID