Title of article
N,N′-Bis(pyridin-3-ylmethyl)ethanediamide monohydrate: crystal structure, Hirshfeld surface analysis and computational study
Author/Authors
Tan, Sang Loon Research Centre for Crystalline Materials - School of Science and Technology - Sunway University, Malaysia , Tiekink, Edward R. T. Research Centre for Crystalline Materials - School of Science and Technology - Sunway University, Malaysia
Pages
12
From page
1
To page
12
Abstract
The molecular structure of the title bis-pyridyl substituted diamide hydrate,
C14H14N4O2H2O, features a central C2N2O2 residue (r.m.s. deviation =
0.0205 A˚ ) linked at each end to 3-pyridyl rings through methylene groups.
The pyridyl rings lie to the same side of the plane, i.e. have a syn-periplanar
relationship, and form dihedral angles of 59.71 (6) and 68.42 (6) with the
central plane. An almost orthogonal relationship between the pyridyl rings is
indicated by the dihedral angle between them [87.86 (5)]. Owing to an anti
disposition between the carbonyl-O atoms in the core, two intramolecular
amide-N—HO(carbonyl) hydrogen bonds are formed, each closing an S(5)
loop. Supramolecular tapes are formed in the crystal via amide-N—
HO(carbonyl) hydrogen bonds and ten-membered {HNC2O}2 synthons.
Two symmetry-related tapes are linked by a helical chain of hydrogen-bonded
water molecules via water-O—HN(pyridyl) hydrogen bonds. The resulting
aggregate is parallel to the b-axis direction. Links between these, via methyleneC—HO(water) and methylene-C—H(pyridyl) interactions, give rise to a
layer parallel to (101); the layers stack without directional interactions between
them. The analysis of the Hirshfeld surfaces point to the importance of the
specified hydrogen-bonding interactions, and to the significant influence of the
water molecule of crystallization upon the molecular packing. The analysis also
indicates the contribution of methylene-C—HO(carbonyl) and pyridyl-C—
HC(carbonyl) contacts to the stability of the inter-layer region. The
calculated interaction energies are consistent with importance of significant
electrostatic attractions in the crystal.
Keywords
crystal structure , diamide , hydrogen bonding , Hirshfeld surface analysis , computational chemistry
Journal title
Acta Crystallographica Section E: Crystallographic Communications
Serial Year
2020
Record number
2624553
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