Title of article
B3LYP/6-311++G** geometry-optimization study of pentahydrates of α- and β-d-glucopyranose Original Research Article
Author/Authors
Frank A. Momany، نويسنده , , Michael Appell، نويسنده , , J.L. Willett، نويسنده , , Wayne B. Bosma، نويسنده ,
Issue Information
دوهفته نامه با شماره پیاپی سال 2005
Pages
18
From page
1638
To page
1655
Abstract
Five water molecules were placed in 37 different configurations around α- and β-d-glucopyranose in the gt, gg, and tg conformational states, and the glucose–water complexes were geometry optimized using density functionals at the B3LYP/6-311++G** level of theory. The five water molecules were organized in space and energy minimized using an empirical potential, AMB02C, and then further geometry optimized using DFT algorithms to minimum energy positions. Electronic energy, zero point vibrational energy, enthalpy, entropy, stress energy on glucose and the water cluster, hydrogen-bond energy, and relative free energy were obtained for each configuration using thermodynamic procedures and an analytical Hessian program. The lowest energy complex was that of a clustering of water molecules around the 1- and 6-hydroxyl positions of the β-gt anomer. Configurations in which the water molecules created a favorable network completely around and under glucose were found to have low energy for both α and β anomers. Calculation of the α/β anomeric ratio using the zero point corrected energy gave, ∼32/68%, highly favoring the β anomer in agreement with the experimental ∼36/64% value. This ratio is better than the ∼50/50% ratio found in our previous monohydrate study. An approximate hydroxymethyl population was obtained by noting average relative energies among the three conformational states, gt, gg, and tg. In the β anomer complexes the gt conformation was favored over the gg state, while in the α anomer complexes the gg state was favored over the gt conformation, with the tg conformations all being of higher energy making little or no contribution to the rotamer population. Some geometry variances, found between glucose in vacuo and glucose after interaction with water molecules, are described and account for some observed C-5–C-6 bond length anomalies reported by us previously for the vacuum glucose structures.
Keywords
B3LYP/6-311++G** , Glucose , Pentahydrates , Relative free energy , Entropy , hydrogen bonds
Journal title
Carbohydrate Research
Serial Year
2005
Journal title
Carbohydrate Research
Record number
964463
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