DocumentCode
115577
Title
On the reachable set of the controlled gene expression system
Author
Parise, Francesca ; Valcher, Maria Elena ; Lygeros, John
Author_Institution
Autom. Control Lab., ETH Zurich, Zurich, Switzerland
fYear
2014
fDate
15-17 Dec. 2014
Firstpage
4597
Lastpage
4604
Abstract
In this paper we investigate the reachable set of a standard stochastic model of controlled gene expression. Specifically, we explore what values of the protein mean and variance are achievable using the available external input, that is, the mRNA production rate. We proceed by constructing invariant sets in two-dimensional projections of the state space. We then use these sets to construct an outer approximation of the reachable region for the protein mean and variance. This can be computed solving a one-dimensional optimization problem and is tight enough to show that it is not possible, using such control input, to arbitrarily reduce the variance while maintaining a high mean. The lower bound on the variance derived with our approach turns out to be much higher than the one available in the literature for the case when both the mRNA production and degradation rate are controlled.
Keywords
genetics; optimisation; production control; proteins; reachability analysis; set theory; state-space methods; stochastic processes; 1D optimization problem; 2D projections; controlled gene expression system; invariant sets; lower bound; mRNA degradation rate control; mRNA production rate control; protein mean; protein variance; reachable region; reachable set; standard stochastic model; state space method; Approximation methods; Control systems; Gene expression; Production; Proteins; Sociology; Statistics;
fLanguage
English
Publisher
ieee
Conference_Titel
Decision and Control (CDC), 2014 IEEE 53rd Annual Conference on
Conference_Location
Los Angeles, CA
Print_ISBN
978-1-4799-7746-8
Type
conf
DOI
10.1109/CDC.2014.7040107
Filename
7040107
Link To Document