DocumentCode :
119517
Title :
Interactive visual support for metagenomic contig binning
Author :
Broeksema, Bertjan ; McGee, Fintan ; Calusinska, Magdalena ; Ghoniem, Mohammad
fYear :
2014
fDate :
25-31 Oct. 2014
Firstpage :
233
Lastpage :
234
Abstract :
Within metagenomics, "Contig Binning" is an important step in the process of reconstructing genomes of species in mixed cultures and environmental samples. We present an interactive visual environment which enables a biologist to statistically analyze the multiple dimensions of data that are typically used during binning, and integrate and compare the results of various binning methods. Our system features a web-based parallel coordinate visualization at the front end and a R server back end for analysis and semi-supervised clustering of contig data.
Keywords :
DNA; Internet; biology computing; data visualisation; genomics; molecular biophysics; pattern clustering; Web-based parallel coordinate visualization; binning method; contig data; environmental sample; interactive visual environment; interactive visual support; metagenomic contig binning; metagenomics; mixed cultures; multiple data dimension; reconstructing genomes; semisupervised clustering; server back end; Assembly; DNA; Data visualization; Genomics; Servers; Visualization;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Visual Analytics Science and Technology (VAST), 2014 IEEE Conference on
Conference_Location :
Paris
Type :
conf
DOI :
10.1109/VAST.2014.7042506
Filename :
7042506
Link To Document :
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