Title :
An Unenumerative DNA Computing Model for Vertex Coloring Problem
Author :
Xu, Jin ; Qiang, Xiaoli ; Yang, Yan ; Wang, Baoju ; Yang, Dongliang ; Luo, Liang ; Pan, Linqiang ; Wang, Shudong
Author_Institution :
Key Lab. of High Confidence Software Technol. of Minist. of Educ., Peking Univ., Beijing, China
fDate :
6/1/2011 12:00:00 AM
Abstract :
The solution space exponential explosion caused by the enumeration of the candidate solutions maybe is the biggest obstacle in DNA computing. In the paper, a new unenumerative DNA computing model for graph vertex coloring problem is presented based on two techniques: 1) ordering the vertex sequence for a given graph in such a way that any two consecutive labeled vertices i and i+1 should be adjacent in the graph as much as possible; 2) reducing the number of encodings representing colors according to the construture of the given graph. A graph with 12 vertices without triangles is solved and its initial solution space includes only 283 DNA strands, which is 0.0532 of 312 (the worst complexity).
Keywords :
DNA; biocomputing; graph colouring; molecular biophysics; vertex functions; DNA strands; graph vertex coloring problem; solution space exponential explosion; two-consecutive labeled vertices; unenumerative DNA computing model; vertex sequence; worst complexity; Biological system modeling; Color; Computational modeling; DNA; DNA computing; Libraries; Probes; DNA computing; polymerase chain reaction; vertex coloring; Base Sequence; Color; Computational Biology; Computer Simulation; Computers, Molecular; DNA; DNA Probes; Electrophoresis, Agar Gel; Molecular Sequence Data; Polymerase Chain Reaction;
Journal_Title :
NanoBioscience, IEEE Transactions on
DOI :
10.1109/TNB.2011.2160996