DocumentCode :
1278236
Title :
Quantum Gate Circuit Model of Signal Integration in Bacterial Quorum Sensing
Author :
Karafyllidis, I.G.
Author_Institution :
Dept. of Electr. & Comput. Eng., Democritus Univ. of Thrace, Xanthi, Greece
Volume :
9
Issue :
2
fYear :
2012
Firstpage :
571
Lastpage :
579
Abstract :
Bacteria evolved cell to cell communication processes to gain information about their environment and regulate gene expression. Quorum sensing is such a process in which signaling molecules, called autoinducers, are produced, secreted and detected. In several cases bacteria use more than one autoinducers and integrate the information conveyed by them. It has not yet been explained adequately why bacteria evolved such signal integration circuits and what can learn about their environments using more than one autoinducers since all signaling pathways merge in one. Here quantum information theory, which includes classical information theory as a special case, is used to construct a quantum gate circuit that reproduces recent experimental results. Although the conditions in which biosystems exist do not allow for the appearance of quantum mechanical phenomena, the powerful computation tools of quantum information processing can be carefully used to cope with signal and information processing by these complex systems. A simulation algorithm based on this model has been developed and numerical experiments that analyze the dynamical operation of the quorum sensing circuit were performed for various cases of autoinducer variations, which revealed that these variations contain significant information about the environment in which bacteria exist.
Keywords :
bioinformatics; cellular biophysics; information theory; microorganisms; molecular biophysics; quantum gates; autoinducers; bacteria; bacterial quorum sensing; quantum gate circuit; quantum gate circuit model; quantum information theory; quorum sensing; signal integration; Biological system modeling; Computational modeling; Information processing; Integrated circuit modeling; Microorganisms; Numerical models; Sensors; Quorum sensing; modeling; quantum gates; quantum information processing; simulation.; systems biology; Bacterial Proteins; Computer Simulation; Quorum Sensing; Signal Transduction; Systems Biology; Transcription Factors; Vibrio;
fLanguage :
English
Journal_Title :
Computational Biology and Bioinformatics, IEEE/ACM Transactions on
Publisher :
ieee
ISSN :
1545-5963
Type :
jour
DOI :
10.1109/TCBB.2011.104
Filename :
5959159
Link To Document :
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