• DocumentCode
    1299411
  • Title

    Regular Networks Can be Uniquely Constructed from Their Trees

  • Author

    Willson, Stephen J.

  • Author_Institution
    Dept. of Math., Iowa State Univ., Ames, IA, USA
  • Volume
    8
  • Issue
    3
  • fYear
    2011
  • Firstpage
    785
  • Lastpage
    796
  • Abstract
    A rooted acyclic digraph N with labeled leaves displays a tree T when there exists a way to select a unique parent of each hybrid vertex resulting in the tree T. Let Tr(N) denote the set of all trees displayed by the network N. In general, there may be many other networks M, such that Tr(M) = Tr(N). A network is regular if it is isomorphic with its cover digraph. If N is regular and D is a collection of trees displayed by N, this paper studies some procedures to try to reconstruct N given D. If the input is D = Tr(N), one procedure is described, which will reconstruct N. Hence, if N and M are regular networks and Tr(N) = Tr(M), it follows that N = M, proving that a regular network is uniquely determined by its displayed trees. If D is a (usually very much smaller) collection of displayed trees that satisfies certain hypotheses, modifications of the procedure will still reconstruct N given D.
  • Keywords
    genetics; genomics; molecular biophysics; trees (mathematics); acyclic digraph; gene mutation; gene trees; hybrid vertex; phylogenetic tree; regular networks; Bioinformatics; Computational biology; Construction industry; Genetics; Pediatrics; Phylogeny; Phylogeny; hybrid.; network; phylogenetic; regular; tree; Cluster Analysis; Computational Biology; Evolution, Molecular; Genes, Fungal; Models, Genetic; Phylogeny;
  • fLanguage
    English
  • Journal_Title
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on
  • Publisher
    ieee
  • ISSN
    1545-5963
  • Type

    jour

  • DOI
    10.1109/TCBB.2010.69
  • Filename
    5551119