Title :
A Mathematical Model to Study the Dynamics of Epithelial Cellular Networks
Author :
Abate, Alessandro ; Vincent, S. ; Dobbe, R. ; Silletti, A. ; Master, Neal ; Axelrod, J.D. ; Tomlin, Claire J.
Author_Institution :
Delft Center for Syst. & Control, Delft Univ. of Technol., Delft, Netherlands
Abstract :
Epithelia are sheets of connected cells that are essential across the animal kingdom. Experimental observations suggest that the dynamical behavior of many single-layered epithelial tissues has strong analogies with that of specific mechanical systems, namely large networks consisting of point masses connected through spring-damper elements and undergoing the influence of active and dissipating forces. Based on this analogy, this work develops a modeling framework to enable the study of the mechanical properties and of the dynamic behavior of large epithelial cellular networks. The model is built first by creating a network topology that is extracted from the actual cellular geometry as obtained from experiments, then by associating a mechanical structure and dynamics to the network via spring-damper elements. This scalable approach enables running simulations of large network dynamics: the derived modeling framework in particular is predisposed to be tailored to study general dynamics (for example, morphogenesis) of various classes of single-layered epithelial cellular networks. In this contribution, we test the model on a case study of the dorsal epithelium of the Drosophila melanogaster embryo during early dorsal closure (and, less conspicuously, germband retraction).
Keywords :
biological tissues; biomechanics; cellular biophysics; physiological models; zoology; Drosophila melanogaster embryo; actual cellular geometry extraction; animal kingdom; connected cells; dorsal epithelium; epithelial cellular network dynamics; germband retraction; mathematical model; mechanical dynamics; mechanical properties; mechanical structure; mechanical systems; morphogenesis; network topology; point masses; sheets; single-layered epithelial tissues; spring-damper elements; Biological system modeling; Cells (biology); Computational modeling; Finite element methods; Mathematical model; Mechanical factors; Epithelium; cellular network; discrete element method; early dorsal closure; morphogenesis; nonlinear dynamical model; spring-damper system; Algorithms; Animals; Computational Biology; Computer Simulation; Drosophila melanogaster; Embryo, Nonmammalian; Epithelial Cells; Epithelium; Models, Biological; Morphogenesis;
Journal_Title :
Computational Biology and Bioinformatics, IEEE/ACM Transactions on
DOI :
10.1109/TCBB.2012.126