DocumentCode
1326590
Title
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes
Author
Kong, Jun ; Cooper, Lee A D ; Wang, Fusheng ; Gutman, David A. ; Gao, Jingjing ; Chisolm, Candace ; Sharma, Ashish ; Pan, Tony ; Van Meir, Erwin G. ; Kurc, Tahsin M. ; Moreno, Carlos S. ; Saltz, Joel H. ; Brat, Daniel J.
Author_Institution
Center for Comprehensive Inf., Emory Univ., Atlanta, GA, USA
Volume
58
Issue
12
fYear
2011
Firstpage
3469
Lastpage
3474
Abstract
Multimodal, multiscale data synthesis is becoming increasingly critical for successful translational biomedical research. In this letter, we present a large-scale investigative initiative on glioblastoma, a high-grade brain tumor, with complementary data types using in silico approaches. We integrate and analyze data from The Cancer Genome Atlas Project on glioblastoma that includes novel nuclear phenotypic data derived from microscopic slides, genotypic signatures described by transcriptional class and genetic alterations, and clinical outcomes defined by response to therapy and patient survival. Our preliminary results demonstrate numerous clinically and biologically significant correlations across multiple data types, revealing the power of in silico multimodal data integration for cancer research.
Keywords
brain; cancer; data integrity; genomics; image representation; large-scale systems; medical image processing; neurophysiology; tumours; TCGA molecular data; biologically significant correlations; cancer genome atlas project; complementary data types; genetic alterations; genotypic signatures; glioblastoma; high-grade brain tumor; in silico approaches; in silico multimodal data integration; integrative analysis; microscopic slides; multimodal analysis; multiple data types; multiscale data synthesis; nuclear phenotypic data; pathology imaging; translational biomedical research; Cancer; Databases; Genetics; Microscopy; Pathology; Tumors; Cluster analysis; glioblastoma (GBM); in silico; multimodal data process; translational integration; Atlases as Topic; Brain Neoplasms; Cluster Analysis; Computational Biology; Computer Simulation; Database Management Systems; Databases, Factual; Gene Expression Profiling; Genotype; Glioblastoma; Humans; Kaplan-Meier Estimate; Microscopy; Phenotype;
fLanguage
English
Journal_Title
Biomedical Engineering, IEEE Transactions on
Publisher
ieee
ISSN
0018-9294
Type
jour
DOI
10.1109/TBME.2011.2169256
Filename
6025272
Link To Document