• DocumentCode
    1326590
  • Title

    Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes

  • Author

    Kong, Jun ; Cooper, Lee A D ; Wang, Fusheng ; Gutman, David A. ; Gao, Jingjing ; Chisolm, Candace ; Sharma, Ashish ; Pan, Tony ; Van Meir, Erwin G. ; Kurc, Tahsin M. ; Moreno, Carlos S. ; Saltz, Joel H. ; Brat, Daniel J.

  • Author_Institution
    Center for Comprehensive Inf., Emory Univ., Atlanta, GA, USA
  • Volume
    58
  • Issue
    12
  • fYear
    2011
  • Firstpage
    3469
  • Lastpage
    3474
  • Abstract
    Multimodal, multiscale data synthesis is becoming increasingly critical for successful translational biomedical research. In this letter, we present a large-scale investigative initiative on glioblastoma, a high-grade brain tumor, with complementary data types using in silico approaches. We integrate and analyze data from The Cancer Genome Atlas Project on glioblastoma that includes novel nuclear phenotypic data derived from microscopic slides, genotypic signatures described by transcriptional class and genetic alterations, and clinical outcomes defined by response to therapy and patient survival. Our preliminary results demonstrate numerous clinically and biologically significant correlations across multiple data types, revealing the power of in silico multimodal data integration for cancer research.
  • Keywords
    brain; cancer; data integrity; genomics; image representation; large-scale systems; medical image processing; neurophysiology; tumours; TCGA molecular data; biologically significant correlations; cancer genome atlas project; complementary data types; genetic alterations; genotypic signatures; glioblastoma; high-grade brain tumor; in silico approaches; in silico multimodal data integration; integrative analysis; microscopic slides; multimodal analysis; multiple data types; multiscale data synthesis; nuclear phenotypic data; pathology imaging; translational biomedical research; Cancer; Databases; Genetics; Microscopy; Pathology; Tumors; Cluster analysis; glioblastoma (GBM); in silico; multimodal data process; translational integration; Atlases as Topic; Brain Neoplasms; Cluster Analysis; Computational Biology; Computer Simulation; Database Management Systems; Databases, Factual; Gene Expression Profiling; Genotype; Glioblastoma; Humans; Kaplan-Meier Estimate; Microscopy; Phenotype;
  • fLanguage
    English
  • Journal_Title
    Biomedical Engineering, IEEE Transactions on
  • Publisher
    ieee
  • ISSN
    0018-9294
  • Type

    jour

  • DOI
    10.1109/TBME.2011.2169256
  • Filename
    6025272