Title :
Development and Initial Results of a Low Cost, Disposable, Point-of-Care Testing Device for Pathogen Detection
Author :
Bearinger, Jane P. ; Dugan, Lawrence C. ; Baker, Brian R. ; Hall, Sara B. ; Ebert, Katja ; Mioulet, Valerie ; Madi, Mikidache ; King, Donald P.
Author_Institution :
Lawrence Livermore Nat. Lab., Livermore, CA, USA
fDate :
3/1/2011 12:00:00 AM
Abstract :
Development of small footprint, disposable, fast, and inexpensive devices for pathogen detection in the field and clinic would benefit human and veterinary medicine by allowing evidence-based responses to future out breaks. We designed and tested an integrated nucleic acid extraction and amplification device employing a loop-mediated isothermal amplification (LAMP) or reverse transcriptase-LAMP assay. Our system provides a screening tool with polymerase-chain-reaction-level sensitivity and specificity for outbreak detection, response, and recovery. Time to result is ~90 min. The device utilizes a swab that collects sample and then transfers it to a disc of cellulose-based nucleic acid binding paper. The disc is positioned within a disposable containment tube with a manual loading port. In order to test for the presence of target pathogens, LAMP reagents are loaded through the tube´s port into contact with the sample containing cellulose disc. The reagents then are isothermally heated to 63°C for ~1 h to achieve sequence-specific target nucleic acid amplification. Due to the presence of a colorimetric dye, amplification induces visible color change in the reagents from purple to blue. As initial demonstrations, we detected methicillin resistant Staphylococcus aureus genomic DNA, as well as recombinant and live foot-and-mouth disease virus.
Keywords :
DNA; biomedical equipment; cellular biophysics; diseases; dyes; genomics; macromolecules; microorganisms; molecular biophysics; cellulose disc; cellulose-based nucleic acid binding paper; colorimetric dye; disposable containment tube; evidence-based response; foot-mouth disease virus; human medicine; integrated nucleic acid amplification device; integrated nucleic acid extraction device; isothermal heating; loop-mediated isothermal amplification; manual loading port; methicillin resistant staphylococcus aureus genomic dna; outbreak detection; pathogen detection; point-of-care testing device; polymerase-chain-reaction-level sensitivity; reverse transcriptase-LAMP assay; sequence-specific target nucleic acid amplification; temperature 63 degC; veterinary medicine; visible color change; DNA; Electron tubes; Isothermal processes; Laboratories; Materials; Pathogens; Prototypes; Device; disposable; methicillin resistant Staphylococcus aureus (MRSA); point-of-care testing (POCT); triage; virus; Colorimetry; DNA, Bacterial; Foot-and-Mouth Disease Virus; Methicillin-Resistant Staphylococcus aureus; Nucleic Acid Amplification Techniques; Point-of-Care Systems; RNA, Viral; Sensitivity and Specificity;
Journal_Title :
Biomedical Engineering, IEEE Transactions on
DOI :
10.1109/TBME.2010.2089054