Title :
Legitimacy of the stochastic Michaelis??Menten approximation
Author :
Sanft, K.R. ; Gillespie, D.T. ; Petzold, L.R.
Author_Institution :
Dept. of Comput. Sci., Univ. of California Santa Barbara, Santa Barbara, CA, USA
fDate :
1/1/2011 12:00:00 AM
Abstract :
Michaelis-Menten kinetics are commonly used to represent enzyme-catalysed reactions in biochemical models. The Michaelis-Menten approximation has been thoroughly studied in the context of traditional differential equation models. The presence of small concentrations in biochemical systems, however, encourages the conversion to a discrete stochastic representation. It is shown that the Michaelis-Menten approximation is applicable in discrete stochastic models and that the validity conditions are the same as in the deterministic regime. The authors then compare the Michaelis-Menten approximation to a procedure called the slow-scale stochastic simulation algorithm (ssSSA). The theory underlying the ssSSA implies a formula that seems in some cases to be different from the well-known Michaelis-Menten formula. Here those differences are examined, and some special cases of the stochastic formulas are confirmed using a first-passage time analysis. This exercise serves to place the conventional Michaelis-Menten formula in a broader rigorous theoretical framework.
Keywords :
biochemistry; catalysis; differential equations; enzymes; reaction kinetics theory; stochastic processes; Michaelis-Menten approximation; biochemical models; differential equation models; enzyme-catalysed reactions; first-passage time analysis; slow-scale stochastic simulation algorithm;
Journal_Title :
Systems Biology, IET
DOI :
10.1049/iet-syb.2009.0057