Title :
Fast Solvers for Molecular Science and Engineering
Author :
Bardhan, Jaydeep P.
Author_Institution :
Dept. of Mol. Biophys. & Physiol., Rush Univ., Chicago, IL, USA
fDate :
6/1/2012 12:00:00 AM
Abstract :
In this review, we illustrate EDA´s potential for high-impact contributions in biodesign using a case study. Fast integral-equation solvers are used widely to analyze electromagnetic fields in circuits and packaging and can be leveraged to understand and design the electrostatic interactions between biological molecules. Fast simulations of Maxwell´s equations enable accurate prediction of system behavior prior to fabrication, and are therefore essential tools for rapid design cycles. To name just one use, fast solvers are critical for timing analysis, i.e., understanding how parasitic interactions between on-chip interconnects delay signal propagation. High-speed circuits possess millions of transistors and interconnects, making fast, accurate simulation an economic necessity to avoid costly product delays and failures.
Keywords :
Maxwell equations; biology; integral equations; EDA potential; Maxwell equations; biodesign; biological molecules; delay signal propagation; economic necessity; electromagnetic fields; electrostatic interaction; engineering; fast integral equation solvers; high impact contribution; high speed circuits; molecular science; on-chip interconnects; product delays; rapid design cycles; timing analysis; Biological system modeling; Computational modeling; Electrostatics; Mathematical model; Molecular biophysics; Proteins; Solvents;
Journal_Title :
Design & Test of Computers, IEEE
DOI :
10.1109/MDT.2012.2192494