• DocumentCode
    1558814
  • Title

    Automated assignment of backbone NMR peaks using constrained bipartite matching

  • Author

    Xu, Ying ; Xu, Dong ; Dongsup Kai ; Olman, Victor ; Razumovskaya, Jane ; Jiang, Tao

  • Author_Institution
    Life Sci. Div., Oak Ridge Nat. Lab., TN, USA
  • Volume
    4
  • Issue
    1
  • fYear
    2002
  • Firstpage
    50
  • Lastpage
    62
  • Abstract
    Peak assignment is a key step in solving protein structures using nuclear magnetic resonance. The authors present a new computational framework for automating this process, particularly for backbone resonance peak assignment, as a constrained weighted bipartite matching problem. Although it´s NP-hard, they have developed a rigorous algorithm to solve the problem
  • Keywords
    NMR spectroscopy; computational complexity; nuclear magnetic resonance; pattern matching; proteins; spectroscopy computing; NP-hard; backbone resonance peak assignment; computational framework; constrained weighted bipartite matching; nuclear magnetic resonance; peak assignment; protein structures; Accuracy; Amino acids; Chemicals; Fuzzy logic; Joining processes; Magnetic resonance; Nuclear magnetic resonance; Protein engineering; Spectroscopy; Spine;
  • fLanguage
    English
  • Journal_Title
    Computing in Science & Engineering
  • Publisher
    ieee
  • ISSN
    1521-9615
  • Type

    jour

  • DOI
    10.1109/5992.976437
  • Filename
    976437