DocumentCode
1600281
Title
A Fast Algorithm Aligning Multiple Microbial Genomic Sequences
Author
Hu, Guangyue ; Shen, Shiyi
Author_Institution
Sch. of Math. Sci., Nankai Univ., Tianjin
fYear
2006
Firstpage
240
Lastpage
243
Abstract
To compare large genomic DNA sequences of related organisms and of different species, researchers need efficient methods to align many long sequences. We developed a new tool super multiple genome alignment (SMGA for short), specially for rapid multiple global alignment of genomic sequences. SMGA can align a data set consisting of 50M of 9 enterobacterial genomic sequences in 40 minutes. Our method is faster when compared with other existing multiple sequences alignment method
Keywords
DNA; biology computing; cellular biophysics; genetics; microorganisms; molecular biophysics; molecular configurations; 40 min; DNA; enterobacterial genomic sequences; fast algorithm; multiple microbial genomic sequences; super multiple genome alignment; Bioinformatics; DNA; Genomics; Humans; Large-scale systems; Mathematics; Mice; Microorganisms; Organisms; Sequences;
fLanguage
English
Publisher
ieee
Conference_Titel
Engineering in Medicine and Biology Society, 2005. IEEE-EMBS 2005. 27th Annual International Conference of the
Conference_Location
Shanghai
Print_ISBN
0-7803-8741-4
Type
conf
DOI
10.1109/IEMBS.2005.1616388
Filename
1616388
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