DocumentCode
1617411
Title
Client Side Decompression Technique Provides Faster DNA Sequence Data Delivery
Author
Sufi, Fahim ; Fang, Qiang ; Cosic, Irena ; Ferguson, Roy
Author_Institution
Sch. of Electr. & Comput. Eng., R. Melbourne Inst. of Technol., Vic.
fYear
2006
Firstpage
2817
Lastpage
2820
Abstract
DNA sequences are generally very long chains of sequentially linked nucleotides. There are four different nucleotides and combinations of these build the nucleotide information of sequence files contained in data sources. When a user searches for any sequence for an organism, a compressed sequence file can be sent from the data source to the user. The compressed file then can be decompressed at the client end resulting in reduced transmission time over the Internet. A compression algorithm that provides a moderately high compression rate with minimal decompression time is proposed in this paper. We also compare a number of different compression techniques for achieving efficient delivery methods from an intelligent genomic search agent over the Internet
Keywords
DNA; Internet; biology computing; genetics; molecular biophysics; molecular configurations; Internet; client side decompression technique; compressed sequence file; data sources; faster DNA sequence data delivery; intelligent genomic search agent; nucleotides; Bioinformatics; Compression algorithms; DNA; Data compression; Dictionaries; Genomics; Internet; Organisms; Pattern matching; Sequences;
fLanguage
English
Publisher
ieee
Conference_Titel
Engineering in Medicine and Biology Society, 2005. IEEE-EMBS 2005. 27th Annual International Conference of the
Conference_Location
Shanghai
Print_ISBN
0-7803-8741-4
Type
conf
DOI
10.1109/IEMBS.2005.1617059
Filename
1617059
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