Title :
Evolutionary Biclustering Algorithm of Gene Expression Data
Author :
Ayadi, Wassim ; Maâtouk, Ons ; Bouziri, Hend
Author_Institution :
LaTICE Lab., Univ. of Tunis, Tunis, Tunisia
Abstract :
Microarrays represent a new technology for measuring expression levels of several genes under various biological conditions generating multiple data. These data can be analyzed by using biclustering method which aims to extract a maximum number of genes and conditions presenting a similar behavior. This paper proposes a new evolutionary approach to obtain maximal high-quality biclusters of highly-correlated genes. The performance of the proposed algorithm is assessed on synthetic gene expression data. Experimental results show that our algorithm competes favorably with several state-of-the-art biclustering algorithms.
Keywords :
biology computing; genetic algorithms; pattern clustering; biological conditions; evolutionary biclustering algorithm; gene expression data; genes expression level measurement; genes extraction; genetic algorithms; highly-correlated genes; maximal high-quality biclusters; microarrays; synthetic gene expression data; Correlation; Evolutionary computation; Gene expression; Noise; Silicon; Sociology; Biclustering; Evolutionary algorithm; Microarray data;
Conference_Titel :
Database and Expert Systems Applications (DEXA), 2012 23rd International Workshop on
Conference_Location :
Vienna
Print_ISBN :
978-1-4673-2621-6
DOI :
10.1109/DEXA.2012.46