DocumentCode :
1704173
Title :
Robustness of minimal biochemical oscillators
Author :
Ibig, Ariane ; Stelling, Jörg
Author_Institution :
Inst. of Comput. Sci., ETH Zurich, Zurich
fYear :
2008
Firstpage :
148
Lastpage :
153
Abstract :
Robustness-the insensitivity to perturbations-is a hallmark of biological systems and it could provide a key to understanding design principles of complex cellular networks. However, current methods for the characterization of parametric robustness in (dynamic models of) biological systems are insufficient because of their local nature and the high dimensionality of the corresponding parameter spaces. Here, we propose first methods for a quantitative characterization of geometries in parameter space that are related to qualitative systems behavior. Using minimal biochemical oscillators as examples, we show that such approaches can provide detailed insight into relations between network structures, behavior, and robustness properties, which is not possible with traditional sampling-based methods. We expect that scaling and resolution of the algorithms could be vastly improved by using more advanced concepts from computational geometry.
Keywords :
biochemistry; biology computing; computational complexity; molecular biophysics; biochemical oscillators; biological systems; computational geometry; network structures; parameter spaces; parametric robustness; quantitative characterization; Biological system modeling; Biological systems; Biology computing; Circuit synthesis; Computational geometry; Computer networks; Feedback; Oscillators; Robustness; Uncertainty;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Communications, Control and Signal Processing, 2008. ISCCSP 2008. 3rd International Symposium on
Conference_Location :
St Julians
Print_ISBN :
978-1-4244-1687-5
Electronic_ISBN :
978-1-4244-1688-2
Type :
conf
DOI :
10.1109/ISCCSP.2008.4537209
Filename :
4537209
Link To Document :
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