Title :
Synchronization of Boolean Networks with Different Update Schemes
Author :
Hao Zhang ; Xingyuan Wang ; Xiaohui Lin
Author_Institution :
Fac. of Electron. Inf. & Electr. Eng., Dalian Univ. of Technol., Dalian, China
fDate :
Sept.-Oct. 1 2014
Abstract :
In this paper, the synchronizations of Boolean networks with different update schemes (synchronized Boolean networks and asynchronous Boolean networks) are investigated. All nodes in Boolean network are represented in terms of semi-tensor product. First, we give the concept of inner synchronization and observe that all nodes in a Boolean network are synchronized with each other. Second, we investigate the outer synchronization between a driving Boolean network and a corresponding response Boolean network. We provide not only the concept of traditional complete synchronization, but also the anti-synchronization and get the anti-synchronization in simulation. Third, we extend the outer synchronization to asynchronous Boolean network and get the complete synchronization between an asynchronous Boolean network and a response Boolean network. Consequently, theorems for synchronization of Boolean networks and asynchronous Boolean networks are derived. Examples are provided to show the correctness of our theorems.
Keywords :
Boolean functions; DNA; genetics; molecular biophysics; molecular configurations; synchronisation; DNA; antisynchronization; asynchronous Boolean networks; gene sequence; genetic transcription; response Boolean network; semitensor product; synchronized Boolean networks; traditional complete synchronization; update schemes; Bioinformatics; Biological system modeling; Computational biology; Manganese; Neural networks; Synchronization; Inner synchronization; anti-synchronization; asynchronous Boolean network; semi-tensor product;
Journal_Title :
Computational Biology and Bioinformatics, IEEE/ACM Transactions on
DOI :
10.1109/TCBB.2014.2338313