• DocumentCode
    1787502
  • Title

    A Grid-Enabled Virtual Screening Gateway

  • Author

    Jaghoori, Mohammad Mahdi ; Van Altena, Allard J. ; Bleijlevens, Boris ; Olabarriaga, Silvia D.

  • Author_Institution
    Acad. Med. Center, Univ. of Amsterdam, Amsterdam, Netherlands
  • fYear
    2014
  • fDate
    3-5 June 2014
  • Firstpage
    24
  • Lastpage
    29
  • Abstract
    In computer-aided drug design, software tools are used to narrow down possible drug candidates, therefore reducing the amount of expensive in vitro research by a process called virtual screening. However, searching for drug candidates among a huge number of alternatives requires extensive computation. In this paper, we describe a science gateway for virtual screening that has been tailored to the specific needs of our local users. By reusing the generic architecture and code of a previously developed science gateway for another scientific discipline, it took us only two months from early requirements analysis to obtain a running gateway. The early empirical results show (1) considerable speed-ups, thanks to usage of grid infrastructure, and, (2) user satisfaction, thanks to the user-centred design of the web interface and automated data management.
  • Keywords
    Internet; grid computing; medical computing; software tools; user centred design; virtual reality; Web interface; automated data management; computer-aided drug design; drug candidates; drug discovery research; grid infrastructure usage; grid-enabled virtual screening gateway; science gateway; software tools; user satisfaction; user-centred design; Computer architecture; Drugs; Libraries; Logic gates; Portals; Software; User interfaces;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Science Gateways (IWSG), 2014 6th International Workshop on
  • Conference_Location
    Dublin
  • Type

    conf

  • DOI
    10.1109/IWSG.2014.11
  • Filename
    6882064