DocumentCode
1806770
Title
Computer Simulation of the Anisotropy of Fluorescence in Ring Molecular Systems: Influence of Disorder and Ellipticity
Author
Herman, Pavel ; Zapletal, David ; Barvik, Ivan
Author_Institution
Dept. of Phys., Univ. of Hradec Kralove, Hradec Kralove, Czech Republic
Volume
1
fYear
2009
fDate
29-31 Aug. 2009
Firstpage
437
Lastpage
442
Abstract
We use massively parallelized system for computer simulation of time dependence of the anisotropy of fluorescence for the ring LH2 from Rhodopseudomonas acidophila with tangential optical transition dipole arrangements. Different models of uncorrelated static disorder and also ellipticity (correlated static disorder) in local molecular energies are taken into account. Dynamical disorder, interaction with a bath, is included in Markovian approximation of the equations of motion for the so called exciton density matrix. In this paper we compare the results for two different models of the spectral density of phonon bath.
Keywords
Markov processes; approximation theory; bioinformatics; molecular biophysics; Markovian approximation; computer simulation; exciton density matrix; massively parallelized system; phonon bath; rhodopseudomonas acidophila; ring molecular systems; tangential optical transition dipole arrangements; uncorrected static disorder; Anisotropic magnetoresistance; Computer simulation; Equations; Excitons; Fluorescence; Geometrical optics; Mathematics; Microorganisms; Physics; Ultrafast optics; LH2 ring; anisotropy of fluorescence; coherence; exciton;
fLanguage
English
Publisher
ieee
Conference_Titel
Computational Science and Engineering, 2009. CSE '09. International Conference on
Conference_Location
Vancouver, BC
Print_ISBN
978-1-4244-5334-4
Electronic_ISBN
978-0-7695-3823-5
Type
conf
DOI
10.1109/CSE.2009.88
Filename
5283389
Link To Document