DocumentCode
1807687
Title
Simulation of Biochemical Networks using Copasi - A Complex Pathway Simulator
Author
Sahle, Sven ; Gauges, Ralph ; Pahle, Jurgen ; Simus, Natalia ; Kummer, Ursula ; Hoops, Stefan ; Lee, Christine ; Singhal, Mudita ; Xu, Liang ; Mendes, Pedro
Author_Institution
Dept. of Bioinformatics & Comput. Biochem., EML Res., Heidelberg
fYear
2006
fDate
3-6 Dec. 2006
Firstpage
1698
Lastpage
1706
Abstract
Simulation and modeling is becoming one of the standard approaches to understand complex biochemical processes. Therefore, there is a big need for software tools that allow access to diverse simulation and modeling methods as well as support for the use of these methods. Here, we present a new software tool that is platform independent, user friendly and offers several unique features. In addition, we discuss numerical considerations and support for the switching between simulation methods
Keywords
biochemistry; biology computing; digital simulation; software tools; COPASI; biochemical networks; complex pathway simulator; modeling; simulation; software tools; Analytical models; Bioinformatics; Computational modeling; Linux; Mathematical model; Parameter estimation; Software tools; Steady-state; Stochastic processes; Switches;
fLanguage
English
Publisher
ieee
Conference_Titel
Simulation Conference, 2006. WSC 06. Proceedings of the Winter
Conference_Location
Monterey, CA
Print_ISBN
1-4244-0500-9
Electronic_ISBN
1-4244-0501-7
Type
conf
DOI
10.1109/WSC.2006.322945
Filename
4117803
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