• DocumentCode
    1822155
  • Title

    Blind deconvolution for diffraction-limited fluorescence microscopy

  • Author

    Pankajakshan, Praveen ; Zhang, Bo ; Blanc-Feraud, Laure ; Kam, Zvi ; Olivo-Marin, Jean-Christophe ; Zerubia, Josiane

  • Author_Institution
    INRIA/CNRS/UNSA, Sophia Antipolis
  • fYear
    2008
  • fDate
    14-17 May 2008
  • Firstpage
    740
  • Lastpage
    743
  • Abstract
    Optical Sections of biological samples obtained from a fluorescence Confocal Laser Scanning Microscopes (CLSM) are often degraded by out-of-focus blur and photon counting noise. Such physical constraints on the observation are a result of the diffraction-limited nature of the optical system, and the reduced amount of light detected by the photomultiplier respectively. Hence, the image stacks can benefit from postprocessing restoration methods based on deconvolution. The parameters of the acquisition system´s Point Spread Function (PSF) may vary during the course of experimentation, and so they have to be estimated directly from the observation data. We describe here an alternate minimization algorithm for the simultaneous blind estimation of the specimen 3D distribution of fluorescent sources and the PSF. Experimental results on real data show that the algorithm provides very good de- convolution results in comparison to theoretical microscope PSF models.
  • Keywords
    biological techniques; biology computing; deconvolution; fluorescence; image restoration; optical microscopy; optical transfer function; Richardson-Lucy algorithm; alternate minimization algorithm; biological specimen; blind deconvolution method; blind estimation; diffraction-limited fluorescence microscopy; fluorescence confocal laser scanning microscopes; point spread function; post-processing restoration methods; total variation regularization; Biomedical optical imaging; Deconvolution; Degradation; Fluorescence; Laser noise; Laser theory; Optical diffraction; Optical microscopy; Optical noise; Photomultipliers; Richardson-Lucy algorithm; blind deconvolution; confocal microscopy; point spread function; total variation regularization;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on
  • Conference_Location
    Paris
  • Print_ISBN
    978-1-4244-2002-5
  • Electronic_ISBN
    978-1-4244-2003-2
  • Type

    conf

  • DOI
    10.1109/ISBI.2008.4541102
  • Filename
    4541102