Title :
A biclustering algorithm with coherent evolution on the contiguous columns facing time-series gene data
Author :
Yun Xue ; Meihang Li ; Zhengling Liao ; Jie Luo ; Tiechen Li ; Hua Xiao ; Xiaohui Hu
Author_Institution :
Sch. of Phys. & Telecommun. Eng., South China Normal Univ., Guangzhou, China
Abstract :
Biclustering technique has become an important tool in analysis of gene expression data. However, most traditional biclustering algorithms focus on biclustering model on non-continuous column. For time series gene expression data, these models neglect the important internal sequential relationship between the time intervals, thus it is not suitable for this kind of data. This paper proposes an effective and exact algorithm, which can be used to mine biclusters with coherent evolution on the contiguous columns on time series gene expression data. The experimental results show that the algorithm can find biclusters of statistical significance and rather strong biological relevance.
Keywords :
biology computing; data analysis; lab-on-a-chip; pattern clustering; time series; biclustering algorithm; gene expression data analysis; noncontinuous column biclustering model; time-series gene expression data; Algorithm design and analysis; Clustering algorithms; Evolution (biology); Gene expression; Matrix converters; Time series analysis; biclustering; consistent evolution; continuous columns; time-series data;
Conference_Titel :
Fuzzy Systems and Knowledge Discovery (FSKD), 2014 11th International Conference on
Conference_Location :
Xiamen
Print_ISBN :
978-1-4799-5147-5
DOI :
10.1109/FSKD.2014.6980855