• DocumentCode
    188888
  • Title

    Grey-box techniques for the identification of a controlled gene expression model

  • Author

    Parise, Francesca ; Ruess, Jakob ; Lygeros, John

  • Author_Institution
    Autom. Control Lab., ETH Zurich, Zurich, Switzerland
  • fYear
    2014
  • fDate
    24-27 June 2014
  • Firstpage
    1498
  • Lastpage
    1503
  • Abstract
    The aim of this paper is to propose a computationally efficient technique for the identification of stochastic biochemical networks, involving only zero and first order reactions, from distribution measurements of the cell population. The moments of the species in such networks evolve according to an affine system, hence the use of grey-box identification methods is suggested. The performance of existing methods and of a new method, based on the transfer function computation, is compared using as benchmark a standard gene expression model. The developed discussion is of interest for the general grey-box identification problem.
  • Keywords
    biology; cellular biophysics; genetics; grey systems; stochastic processes; transfer functions; affine system; cell population; controlled gene expression model identification; distribution measurements; grey-box identification methods; stochastic biochemical network identification; transfer function computation; Equations; Gene expression; Mathematical model; Noise; Optimization; Transfer functions; Vectors;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Control Conference (ECC), 2014 European
  • Conference_Location
    Strasbourg
  • Print_ISBN
    978-3-9524269-1-3
  • Type

    conf

  • DOI
    10.1109/ECC.2014.6862244
  • Filename
    6862244