DocumentCode
1920474
Title
Poster: An Ultra-Fast Computing Pipeline for Metagenome Analysis with Next-Generation DNA Sequencers
Author
Suzuki, Shuji
fYear
2012
fDate
10-16 Nov. 2012
Firstpage
1551
Lastpage
1551
Abstract
Metagenome analysis is useful for not only understanding symbiotic systems but also watching environment pollutions. However, metagenome analysis requires sensitive sequence homology searches which require large computation time and it is thus a bottleneck in current metagenome analysis based on the data from the latest DNA sequencers generally called a next-generation sequencer. To solve the problem, we developed a large-scale computing pipeline for metagenome analysis on TSUBAME2.
Keywords
GPGPU; metagenomics;
fLanguage
English
Publisher
ieee
Conference_Titel
High Performance Computing, Networking, Storage and Analysis (SCC), 2012 SC Companion:
Conference_Location
Salt Lake City, UT
Print_ISBN
978-1-4673-6218-4
Type
conf
DOI
10.1109/SC.Companion.2012.321
Filename
6496105
Link To Document