DocumentCode :
1920474
Title :
Poster: An Ultra-Fast Computing Pipeline for Metagenome Analysis with Next-Generation DNA Sequencers
Author :
Suzuki, Shuji
fYear :
2012
fDate :
10-16 Nov. 2012
Firstpage :
1551
Lastpage :
1551
Abstract :
Metagenome analysis is useful for not only understanding symbiotic systems but also watching environment pollutions. However, metagenome analysis requires sensitive sequence homology searches which require large computation time and it is thus a bottleneck in current metagenome analysis based on the data from the latest DNA sequencers generally called a next-generation sequencer. To solve the problem, we developed a large-scale computing pipeline for metagenome analysis on TSUBAME2.
Keywords :
GPGPU; metagenomics;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
High Performance Computing, Networking, Storage and Analysis (SCC), 2012 SC Companion:
Conference_Location :
Salt Lake City, UT
Print_ISBN :
978-1-4673-6218-4
Type :
conf
DOI :
10.1109/SC.Companion.2012.321
Filename :
6496105
Link To Document :
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