• DocumentCode
    1920474
  • Title

    Poster: An Ultra-Fast Computing Pipeline for Metagenome Analysis with Next-Generation DNA Sequencers

  • Author

    Suzuki, Shuji

  • fYear
    2012
  • fDate
    10-16 Nov. 2012
  • Firstpage
    1551
  • Lastpage
    1551
  • Abstract
    Metagenome analysis is useful for not only understanding symbiotic systems but also watching environment pollutions. However, metagenome analysis requires sensitive sequence homology searches which require large computation time and it is thus a bottleneck in current metagenome analysis based on the data from the latest DNA sequencers generally called a next-generation sequencer. To solve the problem, we developed a large-scale computing pipeline for metagenome analysis on TSUBAME2.
  • Keywords
    GPGPU; metagenomics;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    High Performance Computing, Networking, Storage and Analysis (SCC), 2012 SC Companion:
  • Conference_Location
    Salt Lake City, UT
  • Print_ISBN
    978-1-4673-6218-4
  • Type

    conf

  • DOI
    10.1109/SC.Companion.2012.321
  • Filename
    6496105