• DocumentCode
    1925363
  • Title

    New Distance Measure for Microarray Gene Expressions Using Linear Dynamic Range of Photo Multiplier Tube

  • Author

    Ray, Shubhra Sankar ; Bandyopadhyay, Sanghamitra ; Pal, Sankar K.

  • Author_Institution
    Center for Soft Comput. Res., Indian Stat. Inst., Calcutta
  • fYear
    2007
  • fDate
    5-7 March 2007
  • Firstpage
    337
  • Lastpage
    341
  • Abstract
    This paper deals with a new distance measure for genes using their microarray expressions. The distance measure is called, "maxrange distance ", where an experiment specific normalization factor is incorporated in the computation of the distance. The normalization factor is dependent on the linear dynamic range of the photo multiplier tube (PMT) for scanning fluorescence intensities of the gene expression values. Superiority of this distance measure in the microarray gene ordering problem has been extensively established on widely studied microarray data sets by performing statistical tests
  • Keywords
    biology computing; data analysis; genetics; pattern clustering; photomultipliers; statistical testing; fluorescence intensity scanning; maxrange distance measure; microarray gene expression; microarray gene ordering problem; photo multiplier tube linear dynamic range; statistical testing; Biology computing; DNA; Dynamic range; Fluorescence; Gene expression; Genomics; Machine intelligence; Particle measurements; Performance evaluation; Testing;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computing: Theory and Applications, 2007. ICCTA '07. International Conference on
  • Conference_Location
    Kolkata
  • Print_ISBN
    0-7695-2770-1
  • Type

    conf

  • DOI
    10.1109/ICCTA.2007.92
  • Filename
    4127392