Software tool for probabilistic metabolic pathways construction

Computational automated methods for biochemical pathways constructions are becoming more popular each year. The availability of data of genomes and biochemical reactions allows usage of computers to build probabilistic metabolic routes from an initial compound to a product compound that can be implemented into a living organism. It can allow building novel pathways to reach necessary functionality and implement it into selected microorganism chassis like e.coli or yeast. In this paper we present a prototype of a software tool that can be used to predict possible minimal reactions list and its corresponded genes that should be implemented into chassis organism to achieve required functionality.