Title :
Optimal Genes Selection with a New Multi-objective Evolutional Algorithm Hybriding NSGA-II with EDA
Author :
Fei, Luo ; Juan, Liu
Author_Institution :
Sch. of Comput. Wuhan, Univ. Wuhan, Wuhan
Abstract :
Recent studies on molecular level classification of tissues with DNA microarray technology have produced remarkable results. It is believed that the subtypes of cancer can be distinguished by a set of discriminative genes. To achieve this goal, it not only requires high enough classification accuracy, but also a minimal number of genes as much as possible to lower cost. Meanwhile, the number of samples from different tissues may differ greatly. Therefore, it should also avoid classification bias due to unbalance sample number in different classes. In this paper, we propose a new multi-objective evolutional algorithm (MOEA) framework to select optimal genes, which has both advantages of the non-dominated sorting genetic algorithm II (NSGA-II) and the estimation of distribution algorithm (EDA). Finally, experiment on the data is done, The result shows that our method has good performance.
Keywords :
biological tissues; cancer; genetic engineering; genetics; molecular biophysics; patient diagnosis; patient treatment; DNA microarray technology; EDA; NSGA-II; cancer; estimation of distribution algorithm; molecular level classification; multiobjective evolutional algorithm; nondominated sorting genetic algorithm II; optimal genes selection; tissues; Biomedical computing; Cancer; DNA; Drugs; Electronic design automation and methodology; Filters; Gene expression; Pharmaceutical technology; Production; Sorting; MOEA; gene selection;
Conference_Titel :
BioMedical Engineering and Informatics, 2008. BMEI 2008. International Conference on
Conference_Location :
Sanya
Print_ISBN :
978-0-7695-3118-2
DOI :
10.1109/BMEI.2008.313