Title :
A novel 3D graphical representation of DNA and its application
Author :
Zhou, Jin-yu ; Xiao, Qian-jun ; Deng, Zong-gang ; Ouyang, Zhang-dong
Author_Institution :
Dept. of Math., Hunan Vocational Coll. of Sci. & Technol., Xiangtan, China
Abstract :
A 3D graphical representation of DNA sequence has been derived from chaos game representation of DNA sequence. The 3D graphical representation also avoids loss of information. According to classifications of four bases of DNA sequence we obtain three characteristic curves. The geometrical centers and fluctuation of three curves have been grouped into a twelve-component vector to represent the DNA sequence. The Euclidean distances among introduced vectors are applied to characterize and compare the coding sequences of the first exon of β-globin gene of 11 different species.
Keywords :
DNA; geometry; sequences; 3D graphical representation; DNA sequence; Euclidean distances; chaos game representation; coding sequences; Bovine; DNA; Humans; Logic gates; Mice; Rabbits; Three dimensional displays; Fluctuation; Geometrical Centers; Graphical Representation; Similarity Analysis;
Conference_Titel :
Computer Science and Information Technology (ICCSIT), 2010 3rd IEEE International Conference on
Conference_Location :
Chengdu
Print_ISBN :
978-1-4244-5537-9
DOI :
10.1109/ICCSIT.2010.5565168
