Title :
RCIS: a common interval searching algorithm for amino acid sequences
Author :
Huang, Xiaolu ; Ali, Hesham
Author_Institution :
Dept. of Comput. Sci., Nebraska Univ., Omaha, NE, USA
Abstract :
Protein secondary structure prediction based merely on protein amino acid sequence is a very exciting fundamental challenge in protein structure study. Common interval searching provides a new angle for sequence pattern study. RCIS (redundant element sequence common interval searching) algorithm is designed specifically for protein amino acid sequence common interval searching.
Keywords :
molecular biophysics; proteins; RCIS algorithm; amino acid sequences; common interval searching algorithm; protein secondary structure prediction; redundant element sequence common interval searching; Algorithm design and analysis; Amino acids; Computational Intelligence Society; Computer science; Crystallography; Design methodology; Nuclear magnetic resonance; Protein engineering; Protein sequence; Testing;
Conference_Titel :
Bioinformatics Conference, 2003. CSB 2003. Proceedings of the 2003 IEEE
Print_ISBN :
0-7695-2000-6
DOI :
10.1109/CSB.2003.1227411
