Title : 
A Logical Characterization of Individual-Based Models
         
        
        
            Author_Institution : 
Dept. of Comput. Sci., Clarkson Univ., Potsdam, NY
         
        
        
        
        
        
            Abstract : 
Individual-based models are a relatively new approach to modelling dynamical systems of interacting entities, for example molecules in a biological cell. Although they are computationally expensive, they have the capability of modelling systems more realistically than traditional state-variable models. We give a formal definition of individual-based models, which includes state-variable models as a special case. We examine the questions of when state-variable models are sufficient for accurate modelling of a system, and when individual-based models are necessary. We define notions of abstraction and approximation, and give sufficient conditions that imply that an individual-based model can be approximated by a deterministic state-variable model. We also give negative results: examples of individual-based models that cannot be approximated by any state-variable model.
         
        
            Keywords : 
biochemistry; biology computing; formal verification; temporal logic; biochemical network; deterministic state-variable model; dynamical systems modelling; individual-based models; interacting entity; model checking; temporal logic; Biochemistry; Biological cells; Biological system modeling; Chemistry; Computer science; Differential equations; Logic; Object oriented modeling; Physics; Sufficient conditions; finite model theory; probability; systems biology;
         
        
        
        
            Conference_Titel : 
Logic in Computer Science, 2008. LICS '08. 23rd Annual IEEE Symposium on
         
        
            Conference_Location : 
Pittsburgh, PA
         
        
        
            Print_ISBN : 
978-0-7695-3183-0
         
        
        
            DOI : 
10.1109/LICS.2008.27