Title :
FPGA acceleration of rigid molecule interactions
Author :
Van Court, Tom ; Gu, Yongfeng ; Herbordt, Martin C.
Author_Institution :
Dept. of Electr. & Comput. Eng., Boston Univ., MA, USA
Abstract :
We show how an application of central importance to computational biochemistry can be implemented efficiently on an FPGA. This requires reformulating the algorithm and taking advantage of application characteristics to maximize device utilization.
Keywords :
biochemistry; field programmable gate arrays; FPGA acceleration; computational biochemistry; device utilization; rigid molecule interactions; Acceleration; Application software; Arithmetic; Broadcasting; Convolution; Drugs; Field programmable gate arrays; Predictive models; Quantum computing; Shape;
Conference_Titel :
Field-Programmable Custom Computing Machines, 2004. FCCM 2004. 12th Annual IEEE Symposium on
Print_ISBN :
0-7695-2230-0
DOI :
10.1109/FCCM.2004.33
