DocumentCode
2172098
Title
An Algorithm for alignment-free sequence comparison using Logical Match
Author
Sanil Shanker, P.K. ; Austin, Jim ; Sherly, Elizabeth
Author_Institution
Dept. of Comput. Sci., Univ. of Kerala, India
Volume
3
fYear
2010
fDate
26-28 Feb. 2010
Firstpage
536
Lastpage
538
Abstract
This paper proposes an algorithm for alignment-free sequence comparison using Logical Match. Here, we compute the score using fuzzy membership values which generate automatically from the number of matches and mismatches. We demonstrate the method with both the artificial and real datum. The results show the uniqueness of the method by analyzing DNA sequences taken from NCBI databank.
Keywords
DNA; fuzzy logic; string matching; DNA sequences; NCBI databank; alignment-free sequence comparison; artificial datum; fuzzy membership values; logical match; real datum; Automation; Character generation; Computer science; DNA; Fuzzy logic; Information management; Information technology; Pattern matching; Sequences; Technology management; Alignment-free sequence comparison; Fuzzy membership; Logical Match; String match;
fLanguage
English
Publisher
ieee
Conference_Titel
Computer and Automation Engineering (ICCAE), 2010 The 2nd International Conference on
Conference_Location
Singapore
Print_ISBN
978-1-4244-5585-0
Electronic_ISBN
978-1-4244-5586-7
Type
conf
DOI
10.1109/ICCAE.2010.5452072
Filename
5452072
Link To Document