DocumentCode :
2181001
Title :
Bio-array images processing and genetic networks modelling
Author :
Demongeot, J. ; Berger, F. ; Baum, T.P. ; Thuderoz, F. ; Cohen, O.
Author_Institution :
Fac. of Medicine, TIMC-IMAG CNRS, La Tronche, France
fYear :
2002
fDate :
2002
Firstpage :
50
Lastpage :
53
Abstract :
The new tools available for gene expression studies are essentially the bio-array methods using a large variety of physical detectors (isotopes, fluorescent markers, ultrasound, ...). Here we present an image processing method independent of the detector type, dealing with the noise and with the peaks overlapping, the peaks revealing the detector activity (isotopic in the presented example), correlated with the gene expression. After this first step of image processing, we can extract information about causal influence (activation or inhibition) a gene can exert on other genes, leading to clusters of co-expression in which we extract an interaction matrix explaining the dynamics of coexpression correlated to the studied tissue function.
Keywords :
arrays; genetics; image segmentation; medical image processing; physiological models; activation; bioarray images processing; causal influence information extraction; coexpression clusters; coexpression dynamics; genetic networks modelling; inhibition; mRNAs; studied tissue function; Biomedical imaging; Data mining; Detectors; Gene expression; Genetics; Image processing; Isotopes; Limit-cycles; Noise figure; Testing;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Biomedical Imaging, 2002. Proceedings. 2002 IEEE International Symposium on
Print_ISBN :
0-7803-7584-X
Type :
conf
DOI :
10.1109/ISBI.2002.1029190
Filename :
1029190
Link To Document :
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