DocumentCode
2183435
Title
Use of open linked data in bioinformatics space: A case study
Author
Celebi, Remzi ; Gumus, Ozgur ; Aydin Son, Yesim
Author_Institution
Dept. of Comput. Eng., Ege Univ., İzmir, Turkey
fYear
2013
fDate
25-27 Sept. 2013
Firstpage
1
Lastpage
5
Abstract
In the life sciences, semantic web can support many aspects of bio- and health informatics, with exciting applications appearing in areas ranging from plant genetics to drug discovery. Using semantic technologies with open linked data, provides two kinds of advantages: ability to search multiple datasets through a single framework and ability to search relationships and paths of relationships that go across different datasets. The Bio2RDF project creates a network of coherently linked data across the biological databases. As part of the Bio2RDF project, an integrated bioinformatics warehouse on the semantic web is built. In this paper, a use case with a query for multiple distant data sources which are semantically available through Bio2RDF is defined. The validation of the results by traditional search techniques and discussion for future directions is presented.
Keywords
bioinformatics; data warehouses; drugs; genetics; medical information systems; query processing; semantic Web; Bio2RDF project; bioinformatics space; biological databases; drug discovery; health informatics; integrated bioinformatics warehouse; life sciences; multiple datasets; multiple distant data sources; open linked data; plant genetics; query processing; search techniques; semantic Web; Bioinformatics; Decision support systems; Diseases; Indexes; Bio2RDF; Bioinformatics; Open Linked Data; SPARQL; Semantic Web;
fLanguage
English
Publisher
ieee
Conference_Titel
Health Informatics and Bioinformatics (HIBIT), 2013 8th International Symposium on
Conference_Location
Ankara
Print_ISBN
978-1-4799-0700-7
Type
conf
DOI
10.1109/HIBIT.2013.6661679
Filename
6661679
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