• DocumentCode
    2183435
  • Title

    Use of open linked data in bioinformatics space: A case study

  • Author

    Celebi, Remzi ; Gumus, Ozgur ; Aydin Son, Yesim

  • Author_Institution
    Dept. of Comput. Eng., Ege Univ., İzmir, Turkey
  • fYear
    2013
  • fDate
    25-27 Sept. 2013
  • Firstpage
    1
  • Lastpage
    5
  • Abstract
    In the life sciences, semantic web can support many aspects of bio- and health informatics, with exciting applications appearing in areas ranging from plant genetics to drug discovery. Using semantic technologies with open linked data, provides two kinds of advantages: ability to search multiple datasets through a single framework and ability to search relationships and paths of relationships that go across different datasets. The Bio2RDF project creates a network of coherently linked data across the biological databases. As part of the Bio2RDF project, an integrated bioinformatics warehouse on the semantic web is built. In this paper, a use case with a query for multiple distant data sources which are semantically available through Bio2RDF is defined. The validation of the results by traditional search techniques and discussion for future directions is presented.
  • Keywords
    bioinformatics; data warehouses; drugs; genetics; medical information systems; query processing; semantic Web; Bio2RDF project; bioinformatics space; biological databases; drug discovery; health informatics; integrated bioinformatics warehouse; life sciences; multiple datasets; multiple distant data sources; open linked data; plant genetics; query processing; search techniques; semantic Web; Bioinformatics; Decision support systems; Diseases; Indexes; Bio2RDF; Bioinformatics; Open Linked Data; SPARQL; Semantic Web;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Health Informatics and Bioinformatics (HIBIT), 2013 8th International Symposium on
  • Conference_Location
    Ankara
  • Print_ISBN
    978-1-4799-0700-7
  • Type

    conf

  • DOI
    10.1109/HIBIT.2013.6661679
  • Filename
    6661679