DocumentCode
2188604
Title
Feature Selection of Gene Expression Data Using Regression Model
Author
Shon, Ho Sun ; Ryu, Kenu Ho ; Yang, Kyung-Sook
Author_Institution
Database/.Bioinf. Lab., Chungbuk Nat. Univ., Cheongju, South Korea
fYear
2010
fDate
June 29 2010-July 1 2010
Firstpage
1442
Lastpage
1447
Abstract
There have been a lot of researches that demonstrate the phenomenon of life or the origin of the disease and classify or diagnose the state of the cell. These are usually achieved by the strength of the gene expression under certain circumstances by the microarray which can observe tens and thousands of gene expression profile. It is not feasible to use all the attributes because a lots of gene expression data are involved in microarray experiments. Therefore, in order to select the significant genes from lots of data, we applied the hybrid method combining filter method with LASSO model. As experimental data set, leukemia data are applied to a number of classifiers such as naïve Bayesian, SVM, Bayesian network, logistic regression and random forest. In the experimental result, we found that the gene selection method using the LASSO outperforms the existing gene selection method.
Keywords
Bayes methods; diseases; genetics; medical computing; pattern classification; regression analysis; support vector machines; Bayesian network; LASSO model; SVM; cell state diagnosis; classifier; disease; feature selection; filter method; gene expression profile; gene selection method; leukemia data; logistic regression; microarray experiments; naive Bayesian; random forest; regression model; Bayesian methods; Classification algorithms; Data models; Gene expression; Mathematical model; Predictive models; Sensitivity;
fLanguage
English
Publisher
ieee
Conference_Titel
Computer and Information Technology (CIT), 2010 IEEE 10th International Conference on
Conference_Location
Bradford
Print_ISBN
978-1-4244-7547-6
Type
conf
DOI
10.1109/CIT.2010.258
Filename
5577830
Link To Document