• DocumentCode
    2188604
  • Title

    Feature Selection of Gene Expression Data Using Regression Model

  • Author

    Shon, Ho Sun ; Ryu, Kenu Ho ; Yang, Kyung-Sook

  • Author_Institution
    Database/.Bioinf. Lab., Chungbuk Nat. Univ., Cheongju, South Korea
  • fYear
    2010
  • fDate
    June 29 2010-July 1 2010
  • Firstpage
    1442
  • Lastpage
    1447
  • Abstract
    There have been a lot of researches that demonstrate the phenomenon of life or the origin of the disease and classify or diagnose the state of the cell. These are usually achieved by the strength of the gene expression under certain circumstances by the microarray which can observe tens and thousands of gene expression profile. It is not feasible to use all the attributes because a lots of gene expression data are involved in microarray experiments. Therefore, in order to select the significant genes from lots of data, we applied the hybrid method combining filter method with LASSO model. As experimental data set, leukemia data are applied to a number of classifiers such as naïve Bayesian, SVM, Bayesian network, logistic regression and random forest. In the experimental result, we found that the gene selection method using the LASSO outperforms the existing gene selection method.
  • Keywords
    Bayes methods; diseases; genetics; medical computing; pattern classification; regression analysis; support vector machines; Bayesian network; LASSO model; SVM; cell state diagnosis; classifier; disease; feature selection; filter method; gene expression profile; gene selection method; leukemia data; logistic regression; microarray experiments; naive Bayesian; random forest; regression model; Bayesian methods; Classification algorithms; Data models; Gene expression; Mathematical model; Predictive models; Sensitivity;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computer and Information Technology (CIT), 2010 IEEE 10th International Conference on
  • Conference_Location
    Bradford
  • Print_ISBN
    978-1-4244-7547-6
  • Type

    conf

  • DOI
    10.1109/CIT.2010.258
  • Filename
    5577830