• DocumentCode
    2196683
  • Title

    Services Oriented Architecture for Managing Workflows of Avian Flu Grid

  • Author

    Clementi, Luca ; Krishnan, Sriram ; Goodman, Wesley ; REN, Jingyuan ; Li, Wilfred W. ; Arzberger, Peter W. ; Vareille, Guillaume ; Dallakyan, Sargis ; Sanner, Michel F.

  • Author_Institution
    Nat. Biomed. Comput. Resource, Univ. of California, San Diego, CA, USA
  • fYear
    2008
  • fDate
    7-12 Dec. 2008
  • Firstpage
    582
  • Lastpage
    589
  • Abstract
    The avian flu grid is a virtual organization dedicated to the discovery of novel inhibitors for the pandemic avian flu threat, leveraging grid technologies and computational resources provided by PRAGMA and its partners. In this context it is essential to adopt tools which increase the productivity of the computational scientists without advanced training on grid technologies. To reduce the learning curve, we have augmented tools that most domain scientists are already familiar with, and hidden the complexity of the underlaying infrastructure, through automatic user interface generation and workflow support, beyond the standard command line based approach. Here we describe the current state of the infrastructure deployed and how it has facilitated the training of new researchers in the drug discovery area. We provide details on Vision, a visual programming environment used to define scientific workflows, and Opal, an automatic Web service wrappers for scientific applications on Grid resources, and how they are integrated with other established back-end technologies.
  • Keywords
    Web services; biology computing; diseases; grid computing; programming environments; software architecture; user interfaces; visual programming; workflow management software; Opal; PRAGMA; Vision; augmented tools; automatic Web service wrappers; avian flu grid; computational resources; computational scientists; drug discovery area; grid resources; grid technology; learning curve; pandemic avian flu threat; productivity; scientific workflows; services oriented architecture; user interface generation; virtual organization; visual programming environment; workflow support; Drugs; Grid computing; Influenza; Inhibitors; Pharmaceutical technology; Productivity; Programming environments; Service oriented architecture; User interfaces; Web services; Drug Design; Grid; SOA; Workflow; eScience;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    eScience, 2008. eScience '08. IEEE Fourth International Conference on
  • Conference_Location
    Indianapolis, IN
  • Print_ISBN
    978-1-4244-3380-3
  • Electronic_ISBN
    978-0-7695-3535-7
  • Type

    conf

  • DOI
    10.1109/eScience.2008.37
  • Filename
    4736869