Title :
Efficient I/O and Storage of Adaptive-Resolution Data
Author :
Kumar, Sudhakar ; Edwards, John ; Bremer, Peer-Timo ; Knoll, Aaron ; Christensen, Cameron ; Vishwanath, Venkatram ; Carns, Philip ; Schmidt, John A. ; Pascucci, V.
Author_Institution :
Sci. Comput. & Imaging Inst., Univ. of Utah, Salt Lake City, UT, USA
Abstract :
We present an efficient, flexible, adaptive-resolution I/O framework that is suitable for both uniform and Adaptive Mesh Refinement (AMR) simulations. In an AMR setting, current solutions typically represent each resolution level as an independent grid which often results in inefficient storage and performance. Our technique coalesces domain data into a unified, multiresolution representation with fast, spatially aggregated I/O. Furthermore, our framework easily extends to importance-driven storage of uniform grids, for example, by storing regions of interest at full resolution and nonessential regions at lower resolution for visualization or analysis. Our framework, which is an extension of the PIDX framework, achieves state of the art disk usage and I/O performance regardless of resolution of the data, regions of interest, and the number of processes that generated the data. We demonstrate the scalability and efficiency of our framework using the Uintah and S3D large-scale combustion codes on the Mira and Edison supercomputers.
Keywords :
data structures; grid computing; input-output programs; parallel machines; AMR setting; AMR simulation; Edison supercomputer; I/O performance; Mira supercomputer; PIDX framework; S3D large-scale combustion code; Uintah; adaptive mesh refinement simulation; adaptive-resolution I/O framework; adaptive-resolution data; data resolution; disk usage; domain data; importance-driven storage; independent grid; lower resolution; multiresolution representation; regions of interest; resolution level; uniform grid; Adaptation models; Arrays; Data models; Encoding; Indexes; Layout; Spatial resolution;
Conference_Titel :
High Performance Computing, Networking, Storage and Analysis, SC14: International Conference for
Conference_Location :
New Orleans, LA
Print_ISBN :
978-1-4799-5499-5