DocumentCode :
2323938
Title :
Simplified chain folding models as metaheuristic benchmark for tuning real protein folding algorithms?
Author :
Horvath, Dragos ; Chira, Camelia
Author_Institution :
Lab. d´´InfoChimie, Univ. de Strasbourg, Strasbourg, France
fYear :
2010
fDate :
18-23 July 2010
Firstpage :
1
Lastpage :
8
Abstract :
Lattice-bound folding models are often used by computer scientists as a simplified instance of the chain folding problem (featuring, at the other end of the complexity spectrum, conformational sampling of biologically important molecules). Lattice-bound folding is relatively fast, thus well suited for benchmarking of nature-inspired optimization heuristics. Yet, it is not clear whether the benchmark-winning heuristics are necessarily the best suited for the more complex problems of atom-level resolution conformational sampling. This paper reports the design of - as far as possible - equivalent evolutionary operators and algorithms, for both chains and molecules, to explicitly check whether chain folding may serve as “training ground” for real sampling protocols.
Keywords :
biology computing; evolutionary computation; heuristic programming; mathematical operators; molecular biophysics; molecular configurations; optimisation; proteins; atom-level resolution conformational sampling; equivalent evolutionary algorithms; equivalent evolutionary operators; lattice-bound folding models; metaheuristics; nature-inspired optimization heuristics; protein folding; simplified chain folding models; Biological cells; Computational modeling; Fingerprint recognition; Genetics; Geometry; Lattices; Proteins;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Evolutionary Computation (CEC), 2010 IEEE Congress on
Conference_Location :
Barcelona
Print_ISBN :
978-1-4244-6909-3
Type :
conf
DOI :
10.1109/CEC.2010.5585932
Filename :
5585932
Link To Document :
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