Title :
Performance comparison of techniques for DNA sequence prediction using neural networks
Author :
Nikolova, Alexandra ; Mladenov, Valeri ; Tsenov, Georgi
Author_Institution :
Dept. of Comput. Syst., Tech. Univ. of Sofia, Sofia, Bulgaria
Abstract :
The conversion of symbolic sequences into complex genomic signals reveals surprising regularities of genomes, both locally and at a global scale. This approach allows usage of standard signal processing methods for the nucleotide sequences analysis and specifically for the prediction of nucleotides when knowing the preceding ones in a sequence. In this paper we propose variety of methods and ways when using artificial neural networks at its core to efficiently predict the next sample in the genomic sequence.
Keywords :
biocomputing; genomics; medical signal processing; neural nets; sequences; DNA sequence prediction; artificial neural networks; complex genomic signals; genomes; genomic sequence; nucleotide sequences; nucleotides prediction; standard signal processing; symbolic sequences conversion; DNA; Neural networks; Sequences;
Conference_Titel :
Communications, Control and Signal Processing (ISCCSP), 2010 4th International Symposium on
Conference_Location :
Limassol
Print_ISBN :
978-1-4244-6285-8
DOI :
10.1109/ISCCSP.2010.5463296