Title :
Prediction of coding region in the DNA sequences
Author :
Jleed, Hitham ; Agaian, Sos
Author_Institution :
Dept. of Electr. & Comput. Eng., Univ. of Texas at San Antonio, San Antonio, TX, USA
Abstract :
In this paper, we propose a new algorithm based on Fourier spectral characteristics. This technique improves the coding prediction accuracy, boosting the protein coding region and suppressing the non-coding region within the DNA sequences. We also compare this algorithm using computer simulation with commonly used techniques showing that our technique for exon region prediction provides superior properties for the separation of exon and intron regions.
Keywords :
DNA; Fourier transform spectra; biology computing; encoding; proteins; DNA sequences; Fourier spectral characteristics; coding region prediction; computer simulation; exon region prediction; intron regions; protein coding region; DNA; Digital filters; Discrete Fourier transforms; Encoding; Prediction algorithms; Proteins; DNA; Discrete Fourier transforms; Receiver operating characteristic; indicator sequence;
Conference_Titel :
Systems, Man, and Cybernetics (SMC), 2011 IEEE International Conference on
Conference_Location :
Anchorage, AK
Print_ISBN :
978-1-4577-0652-3
DOI :
10.1109/ICSMC.2011.6083826